Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish
© The Author(s). 2016
Received: 21 July 2016
Accepted: 20 September 2016
Published: 20 October 2016
We are using genetics to identify genes specifically involved in hearing regeneration. In a large-scale genetic screening, we identified mgat5a, a gene in the N-glycosylation biosynthesis pathway whose activity negatively impacts hair cell regeneration.
We used a combination of mutant analysis in zebrafish and a hair cell regeneration assay to phenotype the loss of Mgat5a activity in zebrafish. We used pharmacological inhibition of N-glycosylation by swansonine. We also used over-expression analysis by mRNA injections to demonstrate how changes in N-glycosylation can alter cell signaling.
We found that mgat5a was expressed in multiple tissues during zebrafish embryo development, particularly enriched in neural tissues including the brain, retina, and lateral line neuromasts. An mgat5a insertional mutation and a CRISPR/Cas9-generated truncation mutation both caused an enhancement of hair cell regeneration which could be phenocopied by pharmacological inhibition with swansonine. In addition to hair cell regeneration, inhibition of the N-glycosylation pathway also enhanced the regeneration of lateral line axon and caudal fins. Further analysis showed that N-glycosylation altered the responsiveness of TGF-beta signaling.
The findings from this study provide experimental evidence for the involvement of N-glycosylation in tissue regeneration and cell signaling.
KeywordsZebrafish CRISPR/Cas9 mgat5a N-glycosylation Regeneration
Glycans, together with nucleic acids, proteins, and lipids, constitute the four major components of the cell . Glycans have great structural complexity and are largely diversified in different cell types providing cells with distinct functional properties . Due to technical challenges in the detection and characterization of different sugar forms, glycan research has generally lagged behind genomic and proteomic approaches. The biological consequences of altered glycosylation remains a critical but challenging field of biomedical research .
Glycosylated proteins represent a prominent form of glycan conjugates in the cell. Glycans can be found on a wide variety of proteins, ranging from secreted extracellular proteins, to membrane receptors, to cytosolic proteins . Glycosylation on these proteins offers a potential for modulation of intracellular signaling and intercellular communications [5, 6]. There are two major types of protein glycosylation, with N-glycosylation adding sugars to the nitrogen of asparagine and O-glycosylation adding sugars to the oxygen of serine or threonine residues . It is evident that one single protein can be glycosylated at multiple residues by one or multiple forms of glycosylation. However, the dynamics and the impact of specific glycosylation events are largely unknown, partly due to lack of adequate knowledge on the glycosylation processing enzymes themselves.
Tissue regeneration after traumatic injury is a process demanding complex orchestration of molecular signaling and cell-cell interactions. Since mammals have relatively limited regeneration potential, many non-mammalian vertebrate models, including zebrafish, have been used to study the molecular mechanisms behind regeneration of tissues such as heart, liver, and hair cells (hearing) [8, 9]. These studies have demonstrated a critical involvement of numerous proteins and associated signaling pathways during tissue regeneration; however, the contribution of protein glycosylation in this process remains under-investigated.
In a genetic screen for genes affecting hair cell regeneration in zebrafish, we identified mgat5a as a modifier in the regenerative response. The mgat5a gene is highly conserved across all vertebrates. It encodes for the beta1,6-N-acetylglucosaminyl-transferase V enzyme, a medial golgi enzyme in N-glycosylation pathway catalyzing the biosynthesis of b1,6-GlcNac-branched N-glycosylation to various protein conjugates. Previous reports indicate that Mgat5a plays an important role in tumor metastasis, cell proliferation, and immune cell activation [10–14]. In this study, we examined the spatio-temperal distribution of mgat5a transcript during embryo development and explored the function of Mgat5a and the N-glycosylation pathway in injury-induced tissue regeneration.
An Mgat5a-RFP insertional mutation enhances hair cell regeneration
mgat5a is expressed in neuromast hair cells and supporting cells, but not in mantle cells
To identify which cell types in neuromast were expressing mgat5a, we first crossed the mgat5a mn0157gt line with Et (tnk1bp1:EGFP), in which the tnk1bp1 promoter drives the expression of a green fluorescent protein (GFP) specifically in supporting cells (Fig. 2c) . The resulted double transgenic embryos displayed granulated co-localized fluorescence in some area of the neuromast (Fig. 2d), indicating expression of GFP and RFP in supporting cells. The double transgenic embryos also displayed granulated RFP in some GFP-excluded areas, indicating mgat5a expression in hair cells (Fig. 2d). It is interesting to note that most of the RFP expression did not usually directly co-localize with GFP, even when expressed in the same cells. We believe that this is because the Mgat5a enzyme is sequestered in the golgi apparatus and the GFP expression is cytoplasmic. To further verify the presence of Mgat5a in hair cells, we ablated hair cells using ototoxic chemical copper and then examined the expression levels of the GFP and RFP. After copper exposure, all cells expressed both GFP and RFP, indicating that the GFP-negative, RFP-positive cells were the hair cells.
We also crossed mgat5a mn0157gt with the transgenic line Et (ET20: EGFP), in which the GFP specifically labels the neuromast mantle cells (Fig. 2i) . We found the resulting double transgenic embryos allocated the RFP and GFP proteins in different areas of neuromast, with Mgat5a-RFP in the inner circle of the neuromast (supporting cells) and ET20: EGFP predominantly at the periphery of the neuromast (mantle cells), and no significant overlap between these two fluorescent proteins (Fig. 2j). This distribution pattern indicates that mgat5a is not expressed in the mantle cells.
mgat5a is expressed in neurological tissues during zebrafish embryo development
Histological sections of in situ-stained 5-day-old embryos revealed increased expression of mgat5a in several organs. It was highly expressed in many retinal tissues including the optic nerve and the inner and outer plexiform layers (Fig. 3e). Sections revealed the presence of high levels of mgat5a transcripts in the entire brain area (Fig. 3f), the cristae of the inner ear (Fig. 3f,h), and the spinal cord (Fig. 3g). Histological section analysis also revealed an uneven distribution of mgat5a expression in neuromasts (Fig. 3g,I), supporting its expression in a subpopulation of neuromast cells. In addition, the enrichment of mgat5a was detected in the gut (Fig. 3g), an organ known for high activity of glycosylation enzymes .
An mgat5a deletion mutation enhances hair cell regeneration
CRISPR mutations of other genes in the N-glycosylation pathway had no effect on hair cell regeneration
Mgat5a is a component in N-glycosylation pathway. To examine the role of other components in the N-glycosylation pathway in hair cell regeneration, we used CRISPR/Cas9 targeting to mutate 11 other genes that function at different steps of N-glycosylation pathway (Additional file 1: Figure S1, Additional file 2: Table S1). We found none of the mutated genes as single mutations had an effect on hair cell regeneration (data not shown). We also found no alteration in hair cell regeneration in mutated mgat5b (data not shown), a gene that has presumably overlapping function with mgat5a and is conserved across many species . The failure in identifying other gene candidate may suggest that many components in N-glycosylation pathway have functional redundancy and/or a strong compensatory response.
Inhibition of N-glycosylation pathway enhances hair cell regeneration
Inhibition of N-glycosylation pathway enhances the regeneration of lateral line axon and caudal fin
Alterations in Notch signaling do not explain the observed phenotypes
Inhibition of N-glycosylation pathway reduces responsiveness to TGF-beta antagonists but not agonists
We have not specifically identified members of the TGF-beta superfamily whose alterations result in the observed phenotypes in the mgat5a mutants or swansonine-treated embryos, but it remains an area of active research.
Several features of zebrafish make it a unique model for large-scale genetic screening, including large egg production, a completed genome sequence, a flexible genome-editing toolset, and relatively low cost compared to other vertebrate models. Using zebrafish to study the regeneration of the tissues that do not typically regenerate in mammals allows us to discover key pathways necessary to trigger wound healing.
Our screening reveals that both the mgat5a mn0157gt gene trap mutant and the mgat5a hg29 deletion mutant caused a transient enhancement of hair cell regeneration. The detectable level of wild-type mgat5a mRNA in the mgat5a mn0157gt mutant is likely from some skipping of the gene trap splice acceptor. The increased level of truncated mRNA in the mgat5a hg29 deletion mutant could be caused by a feedback compensation for reduced Mgat5a enzymatic activity. Our sequencing analysis indicated the truncated mRNA contains a frame-shifted mutation that presumably encodes an extra 23 residues followed by a stop codon (data not shown). Since the deletion region spans 8 exons in the middle of the 17-exon gene, it is possible there is an alternative splicing of the truncated mRNA to produce a partially functional Mgat5a protein. We have not yet detected any alternative transcripts.
WISH analysis demonstrated an enrichment of mgat5a in neurological tissues including the brain and retina during early larval development. In addition, mgat5a is highly expressed in hair cells and supporting cells, the neurosensory receptor and glia-like cells that are responsible for detecting sound and motion. This expression pattern is consistent with the role of N-glycosylation in nerve development . Hair cell regeneration was measurably accelerated in the mgat5a mn0157gt mutant and the mgat5a hg29 deletion mutant, a phenotype that could be recapitulated by SW inhibition of the N-glycosylation pathway, suggesting that N-glycosylation also plays a role in nerve regeneration. This hypothesis was further supported by the observation that SW inhibition enhanced regeneration of the lateral line axons that innervate hair cells. It is possible that the enhanced regeneration of caudal fins could also be, at least partially, attributed to the enhanced nerve regeneration in the fin tissue, as nerve signaling has been shown to be important for limb regeneration in axolotls .
It is challenging to identify which signaling pathways are affected by Mgat5a-mediated N-glycosylation during tissue regeneration due to its involvement in a wide variety of cellular functions. N-glycosylation modifies numerous proteins and can affect protein functionality through different mechanisms . Previous studies have shown that Mgat5a has a variety of functions during growth and homeostasis. Mgat5a is important for tumor growth and metastasis and mgat5a mutant showed reduced tumor cell mobility [11, 27, 33, 34]. Mgat5a plays a role in immunity, as Mgat5a deficiency is associated with abnormal T cell activation and autoimmunity [10, 13]. Up-regulation of Mgat5a facilitates keratinocyte proliferation, epidermal hyperplasia, and skin wound healing [12, 14]. In addition, a secreted version of Mgat5a promotes angiogenesis . Furthermore, Mgat5a can modulate the functions of different cytokine receptors .
We probed the involvement of Notch signaling pathway because its components are N-glycosylated and it plays a role in promoting hair cell regeneration [22–24, 36], by comparing the effect of N-glycosylation inhibition with SW and Notch signaling inhibition with DAPT. For hair cell regeneration, the effects of SW and DAPT were similar at 2 dpa but different at 3 dpa. SW promoted axon regeneration, consistent with the effects of DAPT . For caudal fin regeneration, the effect of SW is opposite to that of DAPT [38, 39]. Together, these data suggest that SW-mediated caudal fin regeneration occurs in a Notch-independent mechanism, while SW-mediated regeneration of hair cell and axon may depend on Notch signaling activation. This possibility requires further examination.
TGF-beta signaling is one of the prominent pathways affected by N-glycosylation based on in vitro studies [12, 26, 27]. We found that inhibition of TGF-beta signaling inhibited the regeneration of hair cells and caudal fins (data not shown), the opposite of the effects of SW. Introduction of embryonic TGF-beta/Nodal ligands revealed a reduced responsiveness to the antagonist Lefty1 but not to the agonist Squint, suggesting a possible up-regulation of TGF-beta signaling in the SW-treated embryos. Based on the diversified functions of Mgat5a, TGF-beta signaling is not likely to be the sole contributor for the N-glycosylation effects seen in tissue regeneration. To make it more complicated, the effects on TGF-beta signaling could be due to cross-talk with Notch signaling [40, 41]. Much more work is needed to elucidate why the loss of Mgat5a-mediated N-glycosylation results in an improved regeneration.
Our study demonstrates a role for Mgat5a in modulating the regeneration of multiple tissues, proposing N-glycosylation as a potential therapeutic target for tissue regeneration. We also show that alterations in glycosylation can alter the sensitivity of cell signaling in certain pathways.
All animal work was in compliance with NHGRI IACUC approved protocol G-01-3 assigned to SMB. All procedures were also in compliance with the NRC “Guide for the Care and Use of Laboratory Animals”. Zebrafish embryos were obtained from natural crosses and staged according to Kimmel et al. . WISH was performed as described . For WISH on embryos older than 24 hpf, N-phenylthiourea (Sigma, Cat# 7629) was used to suppress pigment development. mgat5a probe was made using the following primers: probe-F: CAG AGG AGA ACC AAA GCG TGA TGGA; probe-R: GGA CCT CCA ACT GTG TTT TCC TGTC. 10 embryos per data point were used for WISH, and the representative images were shown. Capped mRNAs for lefty1 and squint were synthesized using mMessage mMachine SP6 Transcription Kit (Ambion, Cat# AM1340M). Microinjections of these mRNA were performed in one-cell stage embryos. The injected embryos were sorted at 4 hpf, and only the healthy embryos were used for mock or SW treatment and then for morphological analysis at 24 hpf. For histological sectioning analysis, 5-day-old embryos from in situ hybridization analysis were embedded in paraffin, transversely sectioned at a thickness of 5 μm, and then counterstained by light nuclear fast red to better visualize the in situ staining.
Analysis of mgat5a expression in neuromast cells
Three transgenic lines were used for analyzing mgat5a expression in neuromast cells: mgat5a mn0157gt , Et(tkn1bp1:EGFP) , and Et(ET20:EGFP) . Embryos obtained from single or double transgenic line(s) were sorted based on the encoded fluorescent protein(s). The sorted embryos were used for mock or copper treatment at 5 dpf, mounted in 1 % low-melting agarose, and then imaged under a Meta-510 confocal microscope. For each data point, nine neuromasts from three embryos were examined and imaged, with the representative images shown.
Mutation generation and characterization
mgat5a mn0157gt mutation was identified by a gene trap insertion . mgat5a mn0157gt was genotyped using three primers, with mgat5a-F (CTC TAA CCA GTG ACC TTC TTG CTG) and mgat5a-R (CAA GGA ATT TCA AGT AAC GGT CAC) amplifying the WT allele of 350 bp, with Tol2N (AAT TAC TCA AGT ACT TTA CAC CTC T) and mgat5a-R amplifying the mutant allele of 196 bp. mgat5a hg29 was generated by co-injecting 150 pg of Cas9 mRNA with 50 pg of each of two CRISPR single guide RNAs targeting exon 3 and exon 10 of mgat5a, as previously described . The CRISPR target in exon 3 was GGG TTG ACT GGG TTT GGT CC; in exon 10, it was GGA CTC ATT CGG GAC GGA GC. The E3-E10 deletion mutation was detected using primers E3F (AAG ACT CTA GCT GTT CTT CTGG) and E10R (GAG TCT TGT GGC CTT TGG AC) with an amplicon size of 268 bp. E3F/E10R primers produced no amplicon for the WT allele. For knockdown efficiency analysis, RT-PCR was performed using 10 control and 10 mutant embryos at 3 dpf, with beta-actin as an internal reference. mgat5a transcript was detected by primers E9F (AAG GCG ATA AAG TGG TGG AGC TGA) and Ex12R (AGT GCC ATG GAC TGT GCC GTG AAC TTCC) for mgat5a mn0157gt and by primers E3F and Ex10R for mgat5a hg29 . Detailed information on the generation and detection of other CRISPR/Cas9 mutations are shown in Additional file 2: Table S1.
Hair cell analysis
For hair cell development analysis, the embryos at 5 dpf were used for hair cell staining and counting. For hair cell regeneration analysis, the embryos at 5 dpf were exposed to 10 μM of copper sulfate (Sigma, Cat# 451657) for 2 h, allowed to recover for 48 h except when otherwise indicated, and then used for hair cell staining and counting. Hair cell staining by YO-PRO-1 (Thermo Fisher Scientific, Cat# Y3603) was done as previously described . The stained embryos were oriented for lateral views in a 96-well plate for counting and imaging with a fluorescent microscope. Hair cells per neuromast presented in graphs were obtained by averaging the hair cell counts from four neuromast per embryos at the P1, P2, P4, and P5 positions  from multiple embryos. P2 neuromast was not counted, since it had a greater variation in the number of hair cells. For studying genotype and phenotype correlation, 24–32 embryos obtained from a single pair of heterozygote incross were analyzed and then genotyped. For studying the effect of chemical treatment, the number of wild-type embryos used for each data point was 10, except when otherwise indicated.
The chemicals used in this study were as follows: SW (Sigma, Cat# S9263), DNJ (Sigma, Cat# D9305), and DAPT (Sigma, Cat# D5942). All chemical treatments were performed in a 6-well plate, with each well containing 5 ml of 1 × Holtfreter’s buffer  and fewer than 25 embryos. For measuring the effect on hair cell regeneration, WT embryos were ablated hair cells with 10 μM copper for 2 h at 5 dpf, treated with or without the chemical inhibitor for 48 h (except when otherwise indicated), and then counted hair cells as described. For measuring the effect on caudal fin regeneration, WT embryos at 3 dpf were anesthetized and amputated at the rear end of ventral pigment gap, treated without or with the indicated chemicals for 72 h, and then used for measurement of caudal fin area. The caudal fin area was measured by Image J software, using the anterior end of ventral pigment gap as a visual reference.
Lateral line axon regeneration analysis
To evaluate the effect of swansonine on posterior lateral line (pLL) nerve regeneration, Tg (neuroD:EGFP;mpeg1:mCherry) double transgenic larvae were pre-incubated in E3 medium containing 50 μg/ml swansonine in 0.5 % DMSO for 15 h before neurectomy, from 57 to 72 hpf. As controls, we used larvae incubated only with 0.5 % DMSO. The 3 dpf pre-incubated larvae were anesthetized with 0.01 % tricaine and mounted in rectangular plates sealed with low melting point agarose (0.75 %). The agarose was dissolved in E3 medium containing DMSO or swansonine at the same concentration as the pre-treatment in order to avoid treatment interruption. Once the agarose was set, the embryos were neurectomized [47, 48] using a tungsten electrode connected to a power source under the following conditions: 1 pulse of 1.5 s of duration and 17 μA of current intensity. The pLL nerve was interrupted midway between the pLL ganglion and the L1 neuromast of the primary lateral line, approximately at the fourth somite. After neurectomy, larvae were dismounted and maintained in fresh 2 ml E3 medium containing swansonine or DMSO at 28 °C for 24 h post neurectomy (hpn). Larvae that displayed partial pLL nerve ablation or larvae with an intact pLL nerve were removed from the experiment. After 24 hpn, selected embryos were anesthetized and mounted in agarose plates in order to evaluate nerve regeneration. Using an epifluorescence microscope (Olympus, model IX81), we quantified nerve regrowth by recording the posteriormost somite reached by the nerve after 24 hpn in control and drug-treated larvae. The results were obtained from three independent experiments and a total of 45 control and 33 swansonine-treated larvae were analyzed. All data analysis was performed using Prism 5.0b (GraphPad Prism Software, Inc., USA).
The statistics were performed using the Student t test (two tailed) except otherwise indicated. A difference was considered as significant when the p value was less than 0.05. Bar graphs showed the mean and the standard error of the mean (s.e.m.). All experiments shown were replicated at least two times and produced consistent results.
CRISPR-associated protein 9
Clustered regularly interspaced short palindromic repeats
N-[(3, 5-Difluorophenyl) acetyl-L-alanyl-2-phenyl] glycine-1,1-dimethylethyl ester
Days post ablation
Green fluorescent protein
Red fluorescent protein
Whole-mount in situ hybridization
We would like to thank Raman Sood, MaryPat Jones, Donna Wang, and Jennifer Idol for assisting mutation genotyping; Alisa Beirl and Katie S. Kindt for assisting mechanistic analysis of hair cell regeneration; Shannon Demaria for help with confocal imaging; Gaurav K. Varshney for designing mgat5a hg29 CRISPR targets; Julia Fekecs for graph design; and Dustin Prebilic and Neil Kallgren for animal husbandry.
This research was supported by the Intramural Research Program of the National Human Genome Research Institute (ZIAHG200386-05).
Availability of data and materials
Data sharing not applicable to this article as no datasets were generated or analyzed during the current study.
WP, SCH, and SMB designed the experiments. WP, SCH, LX, and KP performed most of zebrafish experiments. MLC, MS, and MA designed and performed the lateral line axon regeneration experiment. WP and SMB analyzed the data and wrote the manuscript. All read and approved the final manuscript.
The authors declare that they have no competing interests.
Consent for publication
Ethics approval and consent to participate
All experiments involving animals were performed in accordance with the Guide for the Care and Use of Laboratory Animals and were approved by the Animal Care and Use Committee of the National Human Genome Research Institute (ACUC # G-03-01).
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