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GATA2−/− human ESCs undergo attenuated endothelial to hematopoietic transition and thereafter granulocyte commitment
Cell Regenerationvolume 4, Article number: 4 (2015)
Hematopoiesis is a progressive process collectively controlled by an elaborate network of transcription factors (TFs). Among these TFs, GATA2 has been implicated to be critical for regulating multiple steps of hematopoiesis in mouse models. However, whether similar function of GATA2 is conserved in human hematopoiesis, especially during early embryonic development stage, is largely unknown.
To examine the role of GATA2 in human background, we generated homozygous GATA2 knockout human embryonic stem cells (GATA2 −/− hESCs) and analyzed their blood differentiation potential. Our results demonstrated that GATA2 −/− hESCs displayed attenuated generation of CD34+CD43+ hematopoietic progenitor cells (HPCs), due to the impairment of endothelial to hematopoietic transition (EHT). Interestingly, GATA2 −/− hESCs retained the potential to generate erythroblasts and macrophages, but never granulocytes. We further identified that SPI1 downregulation was partially responsible for the defects of GATA2 −/− hESCs in generation of CD34+CD43+ HPCs and granulocytes. Furthermore, we found that GATA2 −/− hESCs restored the granulocyte potential in the presence of Notch signaling.
Our findings revealed the essential roles of GATA2 in EHT and granulocyte development through regulating SPI1, and uncovered a role of Notch signaling in granulocyte generation during hematopoiesis modeled by human ESCs.
Hematopoiesis is a complex process that involves multiple developmental processes, such as cellular proliferation, differentiation, and survival. This process is accurately controlled by the coordination of a set of transcription factors and diverse signaling pathways [1–5]. GATA2 belongs to the transcriptional regulatory GATA protein family and is broadly expressed in hematopoietic cells, particularly in hematopoietic progenitors [6, 7]. The essential function of GATA2 in genesis, differentiation, and even trans-differentiation of hematopoietic stem/or progenitor cells (HSCs or HPCs) has been extensively examined [8, 9]. A GATA2-deficient mouse exhibited severe anemia and died at early stage of gestation due to a reduced number of primitive erythroid cells and HPCs , highlighting the essential role of GATA2 in early hematopoiesis. Furthermore, GATA2 is also crucial in maintaining the proliferation and normal function of adult HSCs or HPCs [7, 11–13]. Recently, de Pater et al. demonstrated that GATA2-deficient hemogenic endothelium (HE) failed to generate long-term repopulating HSCs due to the impairment of endothelial to hematopoietic transition (EHT) . Mechanistically, GATA2 might regulate HPCs through direct activation of other critical factors. For instance, Pimanda et al. described that Gata2, Fli1, and Scl/Tal1 formed a regulatory circuit to regulate early hematopoietic development in the mouse model .
Besides HSCs or HPCs, GATA2 also regulates hematopoietic lineage specification. For example, overexpression of GATA2 in primary erythroid progenitor cells promoted megakaryocyte differentiation while inhibiting erythrocyte differentiation . Adult bone marrow from GATA2 heterozygous mice (GATA2 +/−) exhibited reduced function of granulocyte-macrophage progenitors (GMPs) . The diverse roles of GATA2 in different hematopoietic lineages indicate that its function is largely cell context-dependent [17, 18]. Given that most of the data available now on how GATA2 regulates hematopoiesis are obtained from the murine system, its roles in human background remain elusive and require further investigation.
Human embryonic stem cells (hESCs) are capable of hematopoietic differentiation in vitro and thus could serve as a valuable model for investigating early human hematopoiesis. They could efficiently differentiate into HPCs as well as different hematopoietic lineages, through either co-culturing with stromal cells or embryoid body (EB) formation in the presence of specific cytokines [19, 20]. The hESC-derived HPCs exhibited typical phenotype of blood progenitors, including expressing surface markers as well as forming different blood lineage colonies (colony-forming cells, CFCs). Moreover, most studies to date support that the in vitro blood differentiation of hESCs was a controlled sequential process starting from the early embryonic mesoderm, via HE and HPCs to mature blood cells, recapitulating hematopoietic development in vivo [21, 22]. Therefore, it could serve as a good system to examine the role of GATA2 during early human hematopoiesis.
In this report, through gene targeting, we generated GATA2 −/− human ESCs and analyzed their hematopoietic differentiation potential. Through examining surface markers that were previously identified in hESC-derived HPCs (CD34+CD43+) [23, 24], we found that GATA2 −/− hESCs generated much less HPCs both in the OP9 co-culturing system and a stromal-free medium that could drive blood differentiation. However, GATA2 −/− hESCs retained the potential to produce the major subtype blood lineages, such as erythroblasts and macrophages. In contrast, we observed a complete defect of GATA2 −/− hESCs in generating granulocytes in OP9-driven blood differentiation. Mechanistically, we identified that the granulocyte defect was partially due to the downregulation of SPI1, a critical transcription factor known for myeloid and lymphocyte development in the mouse model. Enforced expression of SPI1 rescued the production of granulocytes of GATA2 −/− hESCs in co-culturing with OP9. Interestingly, GATA2 −/− hESCs restored the potential when co-culturing with OP9 expressing DL1, the Notch signaling ligand. Thus, our findings revealed the critical roles of GATA2 in EHT and granulocyte development in human-modeled hematopoiesis.
Generation of GATA2 −/− human ESCs
Gene targeting in hESCs could be significantly improved with the aid of specifically designed nucleases such as zinc finger nucleases (ZFNs) or transcription activator-like effector nucleases (TALENs) [25–27]. In order to generate GATA2 null human ES cells, we firstly constructed a targeting vector in which a PGK-driven neomycin resistance cassette inserted into exon 3 of the GATA2 gene (Fig. 1a). To facilitate gene targeting, we designed a pair of TALENs specifically recognized and cut the targeting site of the human GATA2 gene. Based on a reporter assay for analyzing the efficiency of TALENs , we showed that the TALENs were highly specific and efficient (Additional file 1: Figure S1A-C). Then, we introduced the linearized targeting vector together with the TALENs into H1 hESCs through electroporation and selected the positive clones using neomycin. After selection, drug-resistant colonies were manually picked for further expansion and screening by genomic PCR and Southern blot. Eventually, we successfully expanded an H1 hESC clone with homozygous disruption of GATA2 alleles (GATA2 −/−) (Fig. 1b–d). The disruption could result in the inability of these cells to generate functional GATA2 protein even though an aberrant mRNA might be generated (Additional file 1: Figure S1D). GATA2 −/− H1 hESCs maintained under undifferentiated condition kept a normal karyotype and exhibited similar characteristics to the wild-type (WT) counterpart regarding surface marker expression, global gene expression profile, as well as teratoma formation (Fig. 1e–h). Furthermore, GATA2 −/− H1 could form typical EBs with upregulation of markers for three early embryonic germ layers during random differentiation (Additional file 1: Figure S2). In summary, GATA2 disruption did not generate obvious alterations in hESCs under conditions for hESC self-renewal and random differentiation.
GATA2 −/− hESCs generate reduced HPCs due to EHT defect
Since GATA2 has been known to be a master regulator for hematopoiesis, we sought to analyze the hematopoietic potential of GATA2 −/− hESCs. In a stromal-free defined condition that could drive blood differentiation, we showed that in contrast to WT hESCs, GATA2 −/− hESCs generated a few HPCs (CD34+CD43+) and blood colony-forming units (CFUs) (Additional file 1: Figure S3). However, when co-culturing with OP9 stromal cells, GATA2 −/− hESCs exhibited CFC potential (Fig. 2a). This data is consistent with previous findings in vivo in the mouse model that mouse ES cells lacking Gata2 could generate certain blood lineages, such as erythrocytes . We confirmed that the GATA2 −/− hESCs failed to express full-length GATA2 mRNAs during the whole process of blood differentiation driven by OP9 co-culture (Fig. 2e and Additional file 1: Figure S1D). Then, we attempted to analyze this process in detail. Upon OP9 co-culture, the HPCs with CFU potential were believed to develop through the EHT process from HEs, the endothelial cells with hematopoietic potential [21, 22, 29–35]. Through further analyzing the surface markers at different differentiation stages during OP9 co-culture, we showed that GATA2 −/− hESCs exhibited little difference in the generation of CD34+CD31+ HEs compared with WT hESCs, but significant reduction in the production of CD34+CD43+ HPCs (Fig. 2b–d). These data indicated that GATA2 was critical for EHT to generate HPCs but not essential for HE determination. Consistently, the transcription factors (TFs) critical for HE determination such as RUNX1 and SCL/TAL1  were successfully activated in GATA2 −/− hESCs, albeit a little lower than in WT hESCs (Fig. 2e, Additional file 1: Figure S4).
To further analyze the function of HEs from GATA2 −/− hESCs, we sorted out the CD34+CD31+CD43− HEs at day 8 of OP9 co-culture. Upon replating them onto OP9 cells for further hematopoietic differentiation, HEs from GATA2 −/− hESCs produced much less CD43+ HPCs compared with WT hESCs (Fig. 2f). Nevertheless, the HEs derived from both WT and GATA2 −/− hESCs expressed typical endothelium markers such as KDR and CD144 (VE-Cadherin) (Fig. 2g). In addition, to explore their endothelial potential, we re-cultured the sorted HEs in endothelial growth medium onto a Matrigel-coated plate. In this condition, GATA2 −/− HEs underwent further endothelial differentiation that displayed a typical endothelial phenotype and formed vascular tubes, which are comparable to WT HEs (Fig. 2h). In general, our data showed that GATA2 null hESCs could develop into functional HE lineages, but undergo deficient EHT to produce HPCs.
Characterization of hematopoietic potential of GATA2 null HPCs
As shown in Fig. 2a, although we could easily detect the major colony-forming cell (CFC) types including erythroid (CFC-E or BFU) and myeloid (granulocytes and macrophages, CFU-Mix) from WT hESCs upon co-culturing with OP9, we only observed erythroid and macrophage CFCs from GATA2 −/− CD34+ cells. We never detected granulocytes (CFU-G) from GATA2 −/− CD34+ cells. Consistent with previous findings, we showed that the potential cells were restricted within the population of CD34+CD43+ (Fig. 3a) . These data indicated that GATA2 might particularly target and regulate granulocyte specification in human ESC-based hematopoiesis.
We then further performed comprehensive characterization of all myeloid lineages generated from GATA2 −/− hESCs/OP9 co-culture. Regarding in vivo embryonic hematopoiesis, two distinct hematopoietic programs, the primitive hematopoiesis and definitive hematopoiesis, have been demonstrated to produce different subtype blood lineages . The primitive hematopoiesis occurred early and mainly produced primitive erythroblasts and macrophages, while the definitive hematopoiesis was associated with definitive erythroid expressing adult beta-globin and pan-myeloid precursors . Both distinct programs have been detected during in vitro hESCs/OP9 co-culturing, but it remains largely challenging to precisely define and separate these two stages . In our system, we could easily detect the erythroid precursors from GATA2 −/− hESCs/OP9 co-culture, characterized by forming E-CFUs or even BFUs (Fig. 3c) with expression of CD235a and CD71, the well-established markers for in vitro-generated erythroid cells  (Fig. 3b). Furthermore, we could detect the expression of both adult globin (HBB) and embryonic globins (HBE and HBG) in erythrocytes from GATA2 −/− hESCs/OP9 (Fig. 3c). Consistently, GATA1, the critical factor known for erythroid specification, was successfully activated and detected in GATA2 −/− erythrocytes (Fig. 3d).
In contrast, myeloid lineages from GATA2 −/− hESCs exhibited significant morphological difference to those from WT hESCs (Fig. 3e). While multiple myeloid lineages such as macrophage (M-CFCs), granulocyte (G-CFCs), and pan-myeloid CFCs (CFU-Mix) were observed from WT hESCs, we only observed mononuclear cells from GATA2 −/− hESCs, which displayed macrophage morphology under a microscope (Fig. 3e). To further confirm the identity of mononuclear cells from GATA2 −/− HPCs, we performed fluorescence-activated cell sorting (FACS) analysis of these cells with specific surface markers. For these surface markers, macrophages highly express both CD11b and CD14 while granulocytes express high CD11b but low CD14; thus, they could be used to discriminate these two lineages as reported by Rafii et al. . Consistently, we showed that GATA2 −/− hESC-derived myeloid cells displayed high expression of both CD11b and CD14, demonstrating that these cells were macrophages, but not granulocytes (Fig. 3e). In another literature, Choi et al. reported that CD14 was expressed in both granulocytic and monocytic cells generated in vitro . Thus, we also examined an additional surface marker to separate these two populations, for example, CD86, which is highly expressed in monocytes/macrophages, but lowly expressed in granulocytes . We found that the GATA2 −/− hESC-derived myeloid cells exclusively expressed high level of CD86 (Fig. 3f), further demonstrating that GATA2 −/− hESCs produced macrophages (M-CFCs), not granulocytes (G-CFCs). Further, Giemsa staining confirmed the morphology for macrophage, but not granulocyte for these monocytes (Fig. 3e). Overall, these data revealed an essential role of GATA2 in regulating granulocyte generation during human ESC-modeled hematopoiesis.
SPI1 was responsible for the HPC and granulocyte defects of GATA2 −/− hESCs
To probe the underlying mechanisms of EHT and granulocyte defects of GATA2 −/− hESCs, we performed RNA-Seq analysis at different hematopoietic differentiation stages. Through hierarchical cluster analysis of the whole genome expression data, we showed that the samples at the same differentiation stage were highly correlated, regardless of GATA2 status (Fig. 4a). Genes upregulated in HEs and HPCs were enriched for the biological function in blood and vessel development, indicating that GATA2 deficiency did not abolish the general blood lineage specification. Indeed, further comparison of HEs or HPCs from GATA2 −/− hESCs with their counterparts from WT hESCs revealed much less difference on the global expression profile (Fig. 4b). In order to figure out the reason for GATA2 −/− HPC failure in the generation of granulocytes, we examined numbers of genes that were known as critical hematopoietic regulators, particularly those downregulated in H1-GATA2 −/− derived HE and/or HPC (Fig. 4c). Even though most of these regulators exhibited less difference between GATA2 −/− and WT cells, we did find some differentially expressed genes, for example, SPI1. SPI1 is a transcription factor that is highly expressed in myeloid and known to be critical for proper development and function of these lineages . Further, through qRT-PCR analysis, we confirmed that GATA2 −/− hESCs failed to activate SPI1 upon co-culture with OP9 (Fig. 4c). These data suggested that SPI1 might be the downstream target for GATA2 to regulate EHT and granulocyte development.
Forced expression of SPI1 rescued HPC and granulocyte defects in GATA2 −/− hESCs
A mouse embryo with homozygous mutation of SPI1 died at later gestation stage with a complete loss of B cells, T cells, and macrophages, demonstrating the essential role of SPI1 in the proper development of such lineages , and SPI1 is one of the four genes used by Sandler et al. to induce hematopoietic MPPs from HUVECs . However, the role of SPI1 in granulocyte development has been conflicting and not yet well documented. Therefore, we sought to examine whether activation of SPI1 could rescue the granulocyte defect of GATA2 −/− hESCs. To this end, we constructed an inducible vector expressing SPI1 in a lentiviral backbone  and introduced it into GATA2 −/− hESCs (Fig. 5a), which could be expressed with Dox addition (Additional file 1: Figure S5). Because SPI1 only started to express at day 6 of differentiation in WT hESCs/OP9 co-culturing (Fig. 4d), we just induced the expression of SPI1 starting at day 6 of differentiation and withdrew the induction during subsequent CFC assay (Fig. 5b). Upon forced induction of SPI1, we showed that CD34+CD43+ HPCs were significantly restored in GATA2 −/− hESCs/OP9 co-culture (Fig. 5c). The granulocyte potential cells (G-CFC) did re-appear in GATA2 −/− hESCs/OP9 with forced expression of SPI1 (Fig. 5d). However, consistent with the previous finding that SPI1 could antagonize with GATA1 to suppress erythropoiesis , we observed a lower level of E-CFCs in GATA2 −/− hESCs/OP9 with forced expression of SPI1 (Fig. 5d). Nonetheless, the granulocytes re-established by SPI1 exhibited typical morphology and surface marker expression compared with those from WT hESCs (Fig. 5e–g). In summary, we demonstrated that SPI1 was the target of GATA2 to ensure normal development of HPCs and granulocytes in human ESC-modeled hematopoiesis, thus highlighting a precise and specific role of GATA2 and SPI1 in the regulation of EHT and granulocyte generation.
GATA2 −/− hESCs partially restored the granulocyte potential in the presence of Notch signaling
It has been shown that Notch signaling could inhibit myelopoiesis on normal stem cells and uncommitted hematopoietic progenitors. This inhibition largely depended on the normal function of GATA2 and could be rescued after GATA2 knockout . However, it remained elusive whether granulocyte commitment could be restored after GATA2 knockout. Therefore, we seeded WT or GATA2 −/− hESC-derived CD34+ HPCs directly onto wild-type OP9 or OP9 expressing DL1 (OP9-DL1), the Notch signaling ligand for further myeloid differentiation with addition of cytokines  (Fig. 6a). As shown in Fig. 6b, the total number of CD11b+ myeloid cells generated from WT hESCs was significantly reduced upon co-culturing with OP9-DL1 compared with OP9, indicating that Notch signaling indeed inhibits myelopoiesis in human cells. However, the Notch-mediated inhibition of myelopoiesis was not obvious on GATA2 −/ hESC-derived CD34+ HPCs (Fig. 6b, upper panel), demonstrating that GATA2 was the critical downstream factor for Notch signaling to inhibit myelopoiesis. Furthermore, we showed that the CD11b+CD14− granulocytes from GATA2 −/− hESCs were significantly restored in the presence of Notch signaling (Fig. 6b, lower panel). Additional markers, such as CD86, also confirmed the generation of granulocytes of GATA2 −/− hESCs on OP9-DL1 (Fig. 6c). These findings demonstrate that the granulocyte potential of GATA2 −/− hESCs could be restored in the presence of Notch signaling.
Currently, studies on hematopoiesis by gene knockout approach have been limited to model organisms, such as zebra fish and mice, while studies on the genetic determinants of human hematopoiesis have been confined to overexpression and knockdown in human pluripotent stem cells. In this report, we proved that human ESCs combined with gene knockout could be utilized to investigate early human hematopoiesis by demonstrating hematopoietic defects generated through deletion of a key hematopoietic transcription factor GATA2 from human ES cell line by TALEN.
The GATA family contains a series of factors that are evolutionally conserved and essential for proper development in mammals. Among them, GATA1, GATA2, and GATA3 express and function predominantly in hematopoietic lineage cells [13, 47]. These factors exhibited spatial and temporal expression patterns among different hematopoietic lineages. For example, GATA2 expression displayed broad distribution but with a prominently high level in early hematopoietic progenitors . The function of GATA factors have been extensively examined in the mouse model through various in vivo experimental approaches. It becomes more and more clear that GATA2 is required for the genesis and/or function of HSCs. However, the function of GATA factors in human hematopoiesis has not been clearly elucidated due to the limitation of embryonic materials. Here, taking the in vitro hematopoietic differentiation of human ESCs as a model, we were able to analyze the function of GATA2 in human background. Aided by TALENs to enhance genome editing, we generated human ESCs with homozygous mutation on GATA2 (GATA2 −/− hESCs). GATA2 −/− hESCs behaved similarly to their wild-type counterparts.
In contrast, regarding hematopoietic differentiation, we observed that GATA2 −/− hESCs generated much less HPCs marked by CD34+CD43+ based on the OP9 co-culture system, but retained the potential to differentiate into major types of hematopoietic lineages, such as erythrocyte and macrophage. Surprisingly, we failed to observed granulocyte differentiation from GATA2 −/− hESCs. This is very different from previous reports. In the mouse model, Tsai and de Pater et al. reported that Gata2−/− mouse ESCs are capable of producing multipotential CFCs including granulocytes albeit in a much smaller number compared to wild-type ESCs [10, 14], and Gao et al. documented the abolished CFC potential of Gata2−/− AGM cells. Our findings indicated that the function of GATA2 would be very crucial for granulocyte development in human ESC-modeled hematopoiesis (Additional file 1: Figure S5). Meanwhile, it is worthy to note that the HPCs from GATA2 −/− hESCs failed to generate any blood CFCs in the stromal-free system (Additional file 1: Figure S3), indicating that OP9 might provide additional factors or proper niche to allow CFC formation for GATA2 −/− HPCs. In addition, the presence of Notch signaling in OP9 stromal cells restored the granulocyte potential of GATA2 −/− ESCs. This finding is consistent with a previous report  and suggests that the effect of Notch signaling in GMP cells requires GATA2 and GATA2 is the downstream of Notch signaling to inhibit HPC commitment to myeloid lineage, and further highlights the important role of the interaction between the extracellular environment and intracellular gene regulation in blood cell development.
GATA2 was also found to play a role in vascular integrity. Mammoto et al. reported that knockdown of GATA2 in endothelial cells impaired vascular formation of human endothelial cells both in vitro and in vivo . Also, Kazenwadel et al. reported that GATA2 knockdown in primary lymphatic endothelial cells abolished the lymphatic endothelial cell marker expression of FOXC2, PROX1, ITGA9, VEGFR3, and ANGPT2 . However, Tsai et al. found that GATA2 −/− embryos showed apparently normal endothelial cells, vitelline vasculature, and heart on E9.5 . Consistent with the report of Tsai et al., we found that the endothelium and vascular formation potential of GATA2 −/− hESCs were normal as demonstrated by capillary structure formation and we observed no general defects in the lymphatic endothelial cell marker expression after GATA2 mutation. This may be due to a complementary mechanism which compensates for the deletion of GATA2.
At the molecular level, several factors have been reported to be direct downstream targets of GATA2 at the HSC stage. For example, SCL/Tal1, a critical factor that controls survival of HPCs at early hematopoiesis, seems to be directly activated and maintained by GATA2 in mouse models . Runx1, another important factor for normal hematopoiesis, was also directly targeted and maintained by Gata2 in mouse HPCs . However, these factors as well as some well-known hematopoietic factors were successfully activated in the absence of GATA2 upon hematopoietic differentiation of human ESCs in our system (Fig. 4c), which might explain why most blood lineages could be generated. However, SPI1, a critical gene, which has been reported to be involved in myeloid development, was significantly downregulated in GATA2 −/− HE and HPCs. Although the partial rescue effect of SPI1 may be due to the overdose effect of forced SPI1 expression, it may also imply that other candidate targets of GATA2 contribute to EHT and/or granulocyte development yet not carefully examined currently.
GATA2 −/− hESCs failed to express SPI1 upon in vitro hematopoiesis through co-culturing with OP9, and GATA2 has been reported to directly target and activate the SPI1 locus in mouse HPCs through two conserved regions . GATA2 has been reported to be involved in EHT [8, 14, 52], whereas the role of SPI1 in EHT has not been well documented. Until very recently, Adam et al. reported that Spi1 was upregulated during the EHT process , and in another milestone study, Sandler et al. reported reprogramming of human endothelial cells to transplantable hematopoietic progenitor cells by FOSB, GFI1, RUNX1, and SPI1 induction . These studies combined with our report proved that SPI1 would potentially serve as an important regulator in EHT. Nevertheless, it is still worthy to note that Gata2 might be with specific functions in SPI1 regulation in different cell types. For instance, Gata2 could bind to the Cebpa promoter, blocking Spi1 and Runx1 binding, and so prevents Cebpa gene activation for the maintenance of cellular identity of mast cells .
Previous studies on the role of SPI1 in granulopoiesis have been conflictive in some degree. Spi1 has been proved to be crucial for HSC maintenance and myeloid differentiation , and Spi1 mutant embryos exhibited multilineage defects including the impairment of granulocytes , while other studies reported that Spi1 −/− granulocyte-monocyte progenitors (GMP) can differentiate into granulocytic precursors but with further maturation impairment  and elimination of Spi1 in GMP in adult mice showed disturbed hematopoiesis with excess granulocyte production . These studies indicated specific roles of SPI1 at different stages of granulocyte development. They implied that dysfunction of SPI1 impairs HSC generation and its commitment to downstream lineages including granulocyte, while SPI1 is not essential for the differentiation of GMP to granulocyte. In our study, we showed that SPI1 could rescue the HPC generation of GATA2 −/− hESCs and the restored HPC is with granulocyte potential. These results confirmed the role of SPI1 in HPC generation and its differentiation to granulocyte in mice and further highlight its conserved role in regulating myeloid development during hematopoiesis (Additional file 1: Figure S6).
In conclusion, we reported the first study of human hematopoiesis through gene knockout and illustrated the roles of GATA2 and SPI1 in EHT and granulocyte generation in early human hematopoiesis. Particularly, we revealed the impact of interaction between Notch signaling and GATA2 on granulocyte development.
GATA2 knockout TALENs were designed as described [25, 26], and their sequences and targeting site were illustrated in Additional file 1: Figure S1. For donor construction, left and right homology arms were cloned from genomic DNA of the H1 cell line. A loxP-flanked PGK-neomycin cassette was further inserted between two homology arms in the vector pUC57. The vector is linearized by EcoRI before targeting. For targeting, 1.5 × 106 H1 cells were electroporated with 1 μg of donor DNA and 2.5 μg of each TALEN plasmid. Then, the cells were seeded on a Matrigel-coated six-well plate in the presence of Y-27632 (10 μM, Sigma). After 2 or 3 days, positive clones were selected by G418 (100 μg/ml, Sigma). Further verifications were carried out by genomic PCR and Southern blot. All primers referred are listed in Additional file 1: Table S1.
Hematopoietic colony-forming assays
Hematopoietic colony-forming assays were performed in 35-mm culture dishes (Stem Cell Technologies, Inc.) using 1 ml per dish of MethoCult™ H4435 enriched medium (Stem Cell Technologies, Inc.) mixed with cells of a certain number according to the manufacturer’s instructions. Colonies were counted on days 14–16 and picked individually, washed in FACS buffer, and spun onto slides with a cytospin apparatus (TXD-3). The cells were then fixed and processed with Wright-Giemsa staining.
FACS analysis and cell sorting
For GFP fluorescence analysis, cells were trypsinized and suspended in FACS buffer (PBS with 2 % FBS (ExCell)) directly for detection by C6 (BD Accuri). For cell surface antigen analysis, cells were stained with antibody cocktail in FACS buffer at 4 °C for 15 to 30 min after trypsinization. Specifically, to analyze day 9 subsets from co-culture, cells were stained with CD43-FITC, CD31-PE, CD34-PerCP-Cy5.5, and TRA-1-85-APC. To analyze and sort HEs in day 8 and HPCs in day 9 of co-culture, CD34+ cells were primarily isolated by MACS (Miltenyi Biotech) and subsequently sorted using a FACSAria cell sorter (BD Biosciences) with cells stained by CD43-FITC, CD31-PE, CD34-PerCP-Cy5.5, and TRA-1-85-APC. To analyze endothelial markers expressed on HEs, cultured HEs were stained by CD144-PE and KDR-PE, respectively. To analyze colony-forming unit (CFU) surface makers, CFU-E were stained with CD235a-PE and CD71a APC; CFU-G/M/GM or myeloid cells derived from HPCs co-cultured with OP9/OP9-DL1 were stained with CD11b-FITC, CD33-PE, CD14-PerCP-Cy5.5, CD13-APC or CD11b-FITC, CD86-PE, CD14-PerCP-Cy5.5; CFU-Mix cells were stained with CD235a-PE, CD13-PerCP-Cy5.5, and CD71a-APC. To analyze the surface maker expressed on pluripotent stem cells, they were stained with no-conjugated primary SSEA-4, TRA-1-60, and TRA-1-81 antibody, respectively, and further stained with species-specific secondary antibodies conjugated to Alexa Fluor® 448 (Invitrogen). For intracellular antigen OCT4, PAX6, and NESTIN analysis, cell fixation and permeabilization were performed before antibody incubation and then cells were stained with primary and secondary antibodies as SSEA4. Particularly, for cell sorting, after staining with antibodies, cells were further stained with DAPI excluding dead cells; the purity of sorted fractions was more than 97 % as tested by FACS. All antibodies used for FACS analysis are listed in Additional file 1: Table S2.
Additional methods are listed in the Additional file 1.
The RNA-Seq data are available in the Gene Expression Omnibus database [accession number: GSE69797].
endothelial to hematopoietic transition
granulocyte and macrophage
human embryonic stem cells
hematopoietic progenitor cells
hematopoietic stem cells
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We thank Dr. Thomas C. Sudhof for offering the Dox-inducible lentivirus and the members in our lab for the kindly help. Also, we thank Dr. Andrew Hutchins for the instruction in the preparation of this manuscript. This work was supported by the following: National Basic Research Program of China, 973 Program of China (2012CB966503, 2011CB965204, 2014CB964604), “Strategic Priority Research Program” of the Chinese Academy of Sciences Grant No. XDA01020202, National Natural Science Foundation of China (31371514, 31200970, 81301340), National Natural Science Foundation-Guangdong Joint Fund No. U1132005, National S&T Major Special Project on Major New Drug Innovation, Grant No. 2011ZX09102010, “Hundred Talents Program” of Chinese Academy of Sciences (to Dr.G Pan), and the Equipment Function Development & Technology Innovation Project of the Chinese Academy of Sciences (Grant Nos. yg2012049, yg2011082, and yg2011083).
The authors declare that they have no competing interests.
KH initiated the study, designed and performed the experiments, and analyzed the data. NM performed gene targeting with KH. JD instructed the study and performed the RNA-Seq and data analysis with XC, XS, QC, and ZY. JZ performed the teratoma assay. PW and YL assisted the RNA extraction and RT-qPCR analysis. SC assisted the OP9 co-culture. XD, MM, and YZ assisted the FACS analysis. WW performed the Dox-inducible lentivirus construction. WL and PL instructed and assisted the lymphocyte differentiation. JC, JL, XS, JW, and DP instructed the study and revised the manuscript. GP conceived and supervised the whole study and wrote the manuscript. All authors read and approved the final manuscript.
Supplemental information includes seven supplemental figures, supplemental figure legends, two supplemental tables, and the extended methods. (PDF 1270 kb)